Issue with Duplicated EDI Control Numbers

I am running into an issue with my outbound EDI flow in B2B manager when my flow run processes more than one page. I have a netsuite saved search that is pulling warehouse orders that I need to send out as 943s, however when the search returns more than one, each of the pages is getting the same control number. These cannot be batched, and when I run the flow after with only one page it seems to have counted each of the previous pages in my edi profile control number. Can someone please advise how I can ensure each page gets its own control number?